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decision biology

Tag pages collect manuscripts that share classification tags or author-provided keywords.

Decision Biology Bridge: ASRA Phase 8 — From Grid Worlds to Perturbation–Response Reasoning

Phase 8 extends ASRA's transition-centric cognitive stack from grid worlds to perturbation–response biology: cell-state hashing, perturbation semantics, pathway hypotheses, and a biological transition graph on LINCS, OmniPath, scPerturb, and HCA context. The article presents theory and architecture; a companion Kaggle notebook deploys the asra-v0.9-phase8 bridge agent for ARC Prize 2026.

ASRA Integrated Architecture — Nine-Layer Stack Reference

Unified architecture reference for the Adaptive Scientific Reasoning Agent (ASRA): nine cognitive layers from experience logging through integration and submission, with read/write contracts, end-to-end data flow, storage schemas, deployment shapes, and links to Phase 1–9 SciLayer preprints.

ASRA for Decision Biology

Adaptive Scientific Reasoning Architecture (ASRA) applied to decision biology: perturbation–response reasoning, world models, and intervention-centric scientific intelligence. Full text available as PDF (versions 1 and 2).